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Ammonia Oxidation by the Arctic Terrestrial Thaumarchaeote Candidatus Nitrosocosmicus arcticus Is Stimulated by Increasing Temperatures
Ricardo Alves
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Melina Kerou
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Anna Zappe
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Romana Bittner
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Sophie S. Abby
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et al.
Journal articles
hal-02313925v1
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Fishing for barcodes in the Torrent: from COI to complete mitogenomes on NGS platforms
Damien Hinsinger
,
Régis Debruyne
,
Maeva Thomas
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Gaël Denys
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Marion I. Mennesson
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et al.
Journal articles
mnhn-02309917v1
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Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility
Rémi Denise
,
Sophie S. Abby
,
Eduardo P. C. Rocha
Journal articles
pasteur-02263349v1
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Genomes of Thaumarchaeota from deep sea sediments reveal specific adaptations of three independently evolved lineages
Melina Kerou
,
Rafael Ponce-Toledo
,
Rui Zhao
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Sophie S. Abby
,
Miho Hirai
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et al.
Journal articles
hal-03365290v1
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Universal and idiosyncratic characteristic lengths in bacterial genomes
Ivan Junier
,
Paul Frémont
,
Olivier Rivoire
Journal articles
hal-01972786v1
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Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria
Alejandro Couce
,
Larissa Viraphong Caudwell
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Christoph Feinauer
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Thomas Hindré
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Jean-Paul Feugeas
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et al.
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (43), pp.E9026 - E9035. ⟨10.1073/pnas.1705887114⟩
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hal-01653591v1
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The goat domestication process inferred from large-scale mitochondrial DNA analysis of wild and domestic individuals
S. Naderi
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H. R. Rezaei
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F. Pompanon
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Michaël G. B. Blum
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R. Negrini
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et al.
Proceedings of the National Academy of Sciences of the United States of America, 2008, 105 (46), pp.17659-17664. ⟨10.1073/pnas.0804782105⟩
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halsde-00377989v1
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Ocular manifestations of syphilis: recent cases over a 2.5-year period.
Cindy Puech
,
Stéphane Gennai
,
Patricia Pavese
,
Isabelle Pelloux
,
Max Maurin
,
et al.
Journal articles
istex
hal-00993906v1
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Guns, germs and dogs: On the origin of Leishmania chagasi
Raphaël Leblois
,
Katrin Kuhls
,
Olivier François
,
Gabriele Schönian
,
Thierry Wirth
Journal articles
istex
hal-02931001v1
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Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers
Melina Kerou
,
Pierre Offre
,
Luis Valledor
,
Sophie S. Abby
,
Michael Melcher
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et al.
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (49), pp.E7937-E7946. ⟨10.1073/pnas.1601212113⟩
Journal articles
hal-03412776v1
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Reducing the ionizing radiation background does not significantly affect the evolution of Escherichia coli populations over 500 generations
Nathanael Lampe
,
Pierre Marin
,
Marianne Coulon
,
Pierre Micheau
,
Lydia Maigne
,
et al.
Journal articles
hal-02337251v1
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Genome wide transcriptomic analysis of the soil ammonia oxidizing archaeon Nitrososphaera viennensis upon exposure to copper limitation
Carolina Reyes
,
Logan Hodgskiss
,
Melina Kerou
,
Thomas Pribasnig
,
Sophie S. Abby
,
et al.
Journal articles
hal-02992775v1
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Contrasting effects of historical contingency on phenotypic and genomic trajectories during a two-step evolution experiment with bacteria
Jessica Plucain
,
Antonia Suau
,
Stéphane Cruveiller
,
Claudine Médigue
,
Dominique Schneider
,
et al.
Journal articles
hal-01653387v1
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Machine learning methods are useful for Approximate Bayesian Computation in evolution and ecology
Michael Blum
Journal articles
hal-01637362v1
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Diversity and survival of artificial lifeforms under sedimentation and random motion
Nicolas Glade
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Olivier Bastien
,
Pascal Ballet
Journal articles
hal-01582506v1
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Robust Frankia phylogeny, species delineation and intraspecies diversity based on Multi-Locus Sequence Analysis (MLSA) and Single-Locus Strain Typing (SLST) adapted to a large sample size
Adrien C Pozzi
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Hector Bautista-Guerrero
,
Sophie S. Abby
,
Aude P Herrera-Belaroussi
,
Danis Abrouk
,
et al.
Journal articles
hal-02313880v1
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The evolution of protein secretion systems by co-option and tinkering of cellular machineries
Rémi Denise
,
Sophie S. Abby
,
Eduardo Rocha
Journal articles
pasteur-02626815v1
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A western Sahara centre of domestication inferred from pearl millet genomes
Concetta Burgarella
,
Philippe Cubry
,
Ndjido A Kane
,
Rajeev K Varshney
,
Cedric Mariac
,
et al.
Journal articles
halshs-03958403v1
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Fibrillin influence on plastid ultrastructure and pigment content in tomato fruit.
Andrew J Simkin
,
Joël Gaffé
,
Jean-Pierre Alcaraz
,
Jean-Pierre Carde
,
Peter M Bramley
,
et al.
Journal articles
istex
hal-00801236v1
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The Genetical Bandwidth Mapping: A spatial and graphical representation of population genetic structure based on the Wombling method
Alain Cercueil
,
Olivier Francois
,
S. Manel
Journal articles
istex
halsde-00283758v1
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Tempo and mode of genome evolution in a 50,000-generation experiment
Olivier Tenaillon
,
Jeffrey E. Barrick
,
Noah Ribeck
,
Daniel E. Deatherage
,
Jeffrey L. Blanchard
,
et al.
Journal articles
hal-01653393v1
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Oral administration of viable Bifidobacterium pseudolongum strain Patronus modified colonic microbiota and increased mucus layer thickness in rat
Irène Mangin
,
Flore Marques Dossou-Yovo
,
Christophe Lévêque
,
Marie-Vincent Dessoy
,
Olivier Sawoo
,
et al.
Journal articles
hal-01980169v1
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The amino-terminal region of dense granule protein 6 of Toxoplasma gondii stimulates IFN-γ production by microglia
Qila Sa
,
Corinne Mercier
,
Marie-France Cesbron-Delauw
,
Yasuhiro Suzuki
Journal articles
hal-02470435v1
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LFMM 2: Fast and Accurate Inference of Gene-Environment Associations in Genome-Wide Studies
Kevin Caye
,
Basile Jumentier
,
Johanna Lepeule
,
Olivier François
Journal articles
inserm-03179375v1
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Non-linear frequency-dependent selection promotes long-term coexistence between bacteria species
Noémie Harmand
,
Valentine Federico
,
Thomas Hindre
,
Thomas Lenormand
Journal articles
hal-02099952v1
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Identification of Protein Secretion Systems in Bacterial Genomes Using MacSyFinder.
Sophie S. Abby
,
Eduardo P C Rocha
Journal articles
hal-01677379v1
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Ancestral Reconstructions Decipher Major Adaptations of Ammonia-Oxidizing Archaea upon Radiation into Moderate Terrestrial and Marine Environments
Sophie S. Abby
,
Melina Kerou
,
Christa Schleper
Journal articles
hal-02992748v1
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Genetic Basis of Exploiting Ecological Opportunity During the Long-Term Diversification of a Bacterial Population
Jessika Consuegra
,
Jessica Plucain
,
Joël Gaffé
,
Thomas Hindré
,
Dominique Schneider
Journal articles
hal-01653588v1
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Geochemical transition zone powering microbial growth in subsurface sediments
Rui Zhao
,
José Mogollón
,
Sophie S. Abby
,
Christa Schleper
,
Jennifer Biddle
,
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2020, pp.202005917. ⟨10.1073/pnas.2005917117⟩
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hal-03079193v1
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