A. Oren and M. Shilo, Anaerobic heterotrophic dark metabolism in the cyanobacterium Oscillatoria limnetica: Sulfur respiration and lactate fermentation, Archives of Microbiology, vol.181, issue.1, pp.77-84, 1979.
DOI : 10.1007/BF00408049

R. Moezelaar, S. M. Bijvank, and L. J. Stal, Fermentation and Sulfur Reduction in the Mat- Building Cyanobacterium Microcoleus chthonoplastes, Appl. Environ. Microbiol, vol.62, pp.1752-1758, 1996.

M. Hoffmeister, A. Van-der-klei, C. Rotte, K. W. Van-grinsven, J. J. Van-hellemond et al., Rhodoquinone:Ubiquinone Ratio and Mitochondrial Proteome Differ under Aerobic and Anaerobic Conditions, Journal of Biological Chemistry, vol.270, issue.21, pp.22422-22429, 2004.
DOI : 10.1038/32096

URL : http://www.jbc.org/content/279/21/22422.full.pdf

M. Müller, M. Mentel, J. J. Van-hellemond, K. Henze, C. Woehle et al., Biochemistry and Evolution of Anaerobic Energy Metabolism in Eukaryotes, Microbiology and Molecular Biology Reviews, vol.76, issue.2, pp.444-495, 2012.
DOI : 10.1128/MMBR.05024-11

L. J. Stal and R. Moezelaar, Fermentation in cyanobacteria, FEMS Microbiology Reviews, vol.21, issue.2, pp.179-211, 1997.
DOI : 10.1016/S0168-6445(97)00056-9

K. Kreuzberg, Starch fermentation via a formate producing pathway in Chlamydomonas reinhardii, Chlorogonium elongatum and Chlorella fusca, Physiologia Plantarum, vol.33, issue.1, pp.87-94, 1984.
DOI : 10.1016/0003-9861(72)90088-4

R. P. Gfeller and M. Gibbs, Fermentative Metabolism of Chlamydomonas reinhardtii: I. Analysis of Fermentative Products from Starch in Dark and Light, PLANT PHYSIOLOGY, vol.75, issue.1, pp.212-218, 1984.
DOI : 10.1104/pp.75.1.212

K. Kreuzberg, G. Klock, and D. Grobheiser, Subcellular distribution of pyruvate-degrading enzymes in Chlamydomonas reinhardtii studied by an improved protoplast fractionation procedure, Physiologia Plantarum, vol.269, issue.3, pp.481-488, 1987.
DOI : 10.1016/0005-2736(69)90059-5

T. E. Maione and M. Gibbs, Hydrogenase-Mediated Activities in Isolated Chloroplasts of Chlamydomonas reinhardii, PLANT PHYSIOLOGY, vol.80, issue.2, pp.360-363, 1986.
DOI : 10.1104/pp.80.2.360

S. S. Merchant, The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions, Science, vol.435, issue.7038, pp.245-250, 2007.
DOI : 10.1038/nature03481

URL : https://hal.archives-ouvertes.fr/hal-00198837

G. Blanc, G. Duncan, I. Agarkova, M. Borodovsky, J. Gurnon et al., NC64A Genome Reveals Adaptation to Photosymbiosis, Coevolution with Viruses, and Cryptic Sex, The Plant Cell, vol.22, issue.9, pp.2943-2955, 2010.
DOI : 10.1105/tpc.110.076406

A. Atteia, R. Van-lis, G. Gelius-dietrich, A. Adrait, J. Garin et al., Mitochondria, Journal of Biological Chemistry, vol.177, issue.15, pp.9909-991, 2006.
DOI : 10.1111/j.1432-1033.1988.tb14356.x

URL : https://hal.archives-ouvertes.fr/hal-01606903

A. Atteia, R. Van-lis, A. G. Tielens, M. , and W. , Anaerobic energy metabolism in unicellular photosynthetic eukaryotes, Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol.1827, issue.2, pp.210-223, 2013.
DOI : 10.1016/j.bbabio.2012.08.002

URL : https://hal.archives-ouvertes.fr/hal-01606900

T. Happe and J. D. Naber, Isolation, characterization and N-terminal amino acid sequence of hydrogenase from the green alga Chlamydomonas reinhardtii, European Journal of Biochemistry, vol.80, issue.2, pp.475-481, 1993.
DOI : 10.1016/S0076-6879(67)11008-2

A. Hemschemeier, J. Jacobs, and T. Happe, Biochemical and Physiological Characterization of the Pyruvate Formate-Lyase Pfl1 of Chlamydomonas reinhardtii, a Typically Bacterial Enzyme in a Eukaryotic Alga, Eukaryotic Cell, vol.7, issue.3, pp.518-526, 2008.
DOI : 10.1128/EC.00368-07

R. Van-lis, C. Baffert, Y. Couté, W. Nitschke, and A. Atteia, Chlamydomonas reinhardtii Chloroplasts Contain a Homodimeric Pyruvate:Ferredoxin Oxidoreductase That Functions with FDX1, PLANT PHYSIOLOGY, vol.161, issue.1, pp.57-71, 2013.
DOI : 10.1104/pp.112.208181

URL : https://hal.archives-ouvertes.fr/hal-01601845

A. Dubini, F. Mus, M. Seibert, A. R. Grossman, and M. C. Posewitz, Lacking Hydrogenase Activity, Journal of Biological Chemistry, vol.78, issue.5, pp.7201-7213, 2009.
DOI : 10.1104/pp.47.2.296

G. Philipps, D. Krawietz, A. Hemschemeier, and T. Happe, A pyruvate formate lyase-deficient Chlamydomonas reinhardtii strain provides evidence for a link between fermentation and hydrogen production in green algae, The Plant Journal, vol.64, issue.2, pp.330-340, 2011.
DOI : 10.1007/s00253-003-1499-9

L. Magneschi, C. Catalanotti, V. Subramanian, A. Dubini, W. Yang et al., A Mutant in the ADH1 Gene of Chlamydomonas reinhardtii Elicits Metabolic Restructuring during Anaerobiosis, PLANT PHYSIOLOGY, vol.158, issue.3, pp.1293-1305, 2012.
DOI : 10.1104/pp.111.191569

C. Catalanotti, A. Dubini, V. Subramanian, W. Yang, L. Magneschi et al., Altered Fermentative Metabolism in Chlamydomonas reinhardtii Mutants Lacking Pyruvate Formate Lyase and Both Pyruvate Formate Lyase and Alcohol Dehydrogenase, THE PLANT CELL ONLINE, vol.24, issue.2, pp.692-707, 2012.
DOI : 10.1105/tpc.111.093146

W. Yang, C. Catalanotti, S. Adamo, T. M. Wittkopp, C. J. Ingram-smith et al., during Dark Anoxia and the Dominant Role of Chloroplasts in Fermentative Acetate Production, The Plant Cell Online, vol.26, issue.11, pp.4499-4518, 2014.
DOI : 10.1105/tpc.114.129965

S. J. Burgess, H. Taha, J. A. Yeoman, O. Iamshanova, K. X. Chan et al., Chloroplasts, Plant and Cell Physiology, vol.131, issue.1, pp.82-94, 2016.
DOI : 10.1104/pp.108.129288

S. M. Adl, The Revised Classification of Eukaryotes, Journal of Eukaryotic Microbiology, vol.56, issue.5, pp.429-493, 2012.
DOI : 10.1016/j.ympev.2010.04.020

A. Atteia, R. Van-lis, G. Mendoza-hernández, K. Henze, W. Martin et al., Bifunctional aldehyde/alcohol dehydrogenase (ADHE) in chlorophyte algal mitochondria, Plant Molecular Biology, vol.53, issue.1/2, pp.175-188, 2003.
DOI : 10.1023/B:PLAN.0000009274.19340.36

URL : https://hal.archives-ouvertes.fr/hal-01606903

W. Yang, E. Li, T. Kairong, S. L. Stanley, and . Jr, Entamoeba histolytica has an alcohol dehydrogenase homologous to the multifunctional adhE gene product of Escherichia coli, Molecular and Biochemical Parasitology, vol.64, issue.2, pp.253-260, 1994.
DOI : 10.1016/0166-6851(93)00020-A

L. B. Sánchez, Aldehyde Dehydrogenase (CoA-Acetylating) and the Mechanism of Ethanol Formation in the Amitochondriate Protist,Giardia lamblia, Archives of Biochemistry and Biophysics, vol.354, issue.1, pp.57-64, 1998.
DOI : 10.1006/abbi.1998.0664

R. J. Spreitzer and L. J. Mets, Non-mendelian mutation affecting ribulose-1, 5-bisphosphate carboxylase structure and activity, Nature, vol.24, issue.5760, pp.114-115, 1980.
DOI : 10.1016/0304-4165(79)90319-2

M. Dron, M. Rahire, J. D. Rochaix, and L. Mets, First DNA sequence of a chloroplast mutation: A missense alteration in the ribulosebisphosphate car???ylase large subunit gene, Plasmid, vol.9, issue.3, pp.321-324, 1983.
DOI : 10.1016/0147-619X(83)90009-4

M. Terashima, M. Specht, B. Naumann, and M. Hippler, by Quantitative Proteomics, Molecular & Cellular Proteomics, vol.261, issue.7, pp.1514-1532, 2010.
DOI : 10.1073/pnas.0702340104

B. Boxma, F. Voncken, S. Jannink, T. Van-alen, A. Akhmanova et al., The anaerobic chytridiomycete fungus Piromyces sp. E2 produces ethanol via pyruvate:formate lyase and an alcohol dehydrogenase E, Molecular Microbiology, vol.236, issue.5, pp.1389-1399, 2004.
DOI : 10.1042/bj2360729

R. Laurenceau, P. V. Krasteva, A. Diallo, S. Ouarti, M. Duchateau et al., Conserved Streptococcus pneumoniae Spirosomes Suggest a Single Type of Transformation Pilus in Competence, PLOS Pathogens, vol.33, issue.4, p.1004835, 2015.
DOI : 10.1371/journal.ppat.1004835.s006

S. G. Ball, L. Dirick, A. Decq, J. C. Martiat, and R. F. Matagne, Physiology of starch storage in the monocellular alga Chlamydomonas reinhardtii, Plant Science, vol.66, issue.1, pp.1-9, 1990.
DOI : 10.1016/0168-9452(90)90162-H

S. Schmöllinger, T. Mühlhaus, N. R. Boyle, I. K. Blaby, D. Casero et al., Nitrogen-Sparing Mechanisms in Chlamydomonas Affect the Transcriptome, the Proteome, and Photosynthetic Metabolism, The Plant Cell, vol.26, issue.4, pp.1410-1435, 2014.
DOI : 10.1105/tpc.113.122523

L. Valledor, T. Furuhashi, L. Recuenco-muñoz, S. Wienkoop, and W. Weckwerth, System-level network analysis of nitrogen starvation and recovery in Chlamydomonas reinhardtii reveals potential new targets for increased lipid accumulation, Biotechnology for Biofuels, vol.9, issue.2047, p.171, 2014.
DOI : 10.1038/nmeth.2019

C. Zabawinski, N. Van-den-koornhuyse, C. D-'hulst, R. Schlichting, C. Giersch et al., Starchless Mutants of Chlamydomonas reinhardtii Lack the Small Subunit of a Heterotetrameric ADP-Glucose Pyrophosphorylase, Journal of Bacteriology, vol.183, issue.3, pp.1069-1077, 2001.
DOI : 10.1128/JB.183.3.1069-1077.2001

URL : https://hal.archives-ouvertes.fr/hal-00085522

Y. Wang, D. Duanmu, and M. H. Spalding, Carbon dioxide concentrating mechanism in Chlamydomonas reinhardtii: inorganic carbon transport and CO2 recapture, Photosynthesis Research, vol.58, issue.1-3, pp.115-122, 2011.
DOI : 10.1111/j.1365-313X.2008.03758.x

J. V. Moroney, H. D. Husic, N. E. Tolbert, M. Kitayama, L. J. Manuel et al., Isolation and Characterization of a Mutant of Chlamydomonas reinhardtii Deficient in the CO2 Concentrating Mechanism, PLANT PHYSIOLOGY, vol.89, issue.3, pp.897-903, 1989.
DOI : 10.1104/pp.89.3.897

H. Fukuzawa, K. Miura, K. Ishizaki, K. I. Kucho, T. Saito et al., Ccm1, a regulatory gene controlling the induction of a carbon-concentrating mechanism in Chlamydomonas reinhardtii by sensing CO2 availability, Proceedings of the National Academy of Sciences, vol.221, issue.3, pp.5347-5352, 2001.
DOI : 10.1007/BF00259410

J. Karlsson, A. K. Clarke, Z. Y. Chen, S. Y. Hugghins, Y. I. Park et al., A novel alpha -type carbonic anhydrase associated with the thylakoid membrane in Chlamydomonas reinhardtii is required for growth at ambient CO2, The EMBO Journal, vol.17, issue.5, pp.1208-1216, 1998.
DOI : 10.1093/emboj/17.5.1208

X. Johnson, K. Wostrikoff, G. Finazzi, R. Kuras, C. Schwarz et al., MRL1, a Conserved Pentatricopeptide Repeat Protein, Is Required for Stabilization of rbcL mRNA in Chlamydomonas and Arabidopsis, The Plant Cell, vol.22, issue.1, pp.234-248, 2010.
DOI : 10.1105/tpc.109.066266

X. Johnson, J. Steinbeck, R. M. Dent, H. Takahashi, P. Richaud et al., Proton Gradient Regulation 5-Mediated Cyclic Electron Flow under ATP- or Redox-Limited Conditions: A Study of ??ATPase pgr5 and ??rbcL pgr5 Mutants in the Green Alga Chlamydomonas reinhardtii, PLANT PHYSIOLOGY, vol.165, issue.1, pp.438-452, 2014.
DOI : 10.1104/pp.113.233593

K. Kucho, S. Yoshioka, F. Taniguchi, K. Ohyama, and H. Fukuzawa, Cis-acting Elements and DNA-Binding Proteins Involved in CO2-Responsive Transcriptional Activation of Cah1 Encoding a Periplasmic Carbonic Anhydrase in Chlamydomonas reinhardtii, PLANT PHYSIOLOGY, vol.133, issue.2, pp.783-793, 2003.
DOI : 10.1104/pp.103.026492

T. Dagan, M. Roettger, K. Stucken, G. Landan, R. Koch et al., Genomes of Stigonematalean Cyanobacteria (Subsection V) and the Evolution of Oxygenic Photosynthesis from Prokaryotes to Plastids, Genome Biology and Evolution, vol.16, issue.1, pp.31-44, 2014.
DOI : 10.1101/gr.5322306

P. J. Keeling, The endosymbiotic origin, diversification and fate of plastids, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.16, issue.17, pp.729-748, 2010.
DOI : 10.1016/j.cub.2006.08.018

E. Cabiscol, J. Aguilar, R. , and J. , Metal-catalyzed oxidation of Fe2+ dehydrogenases. Consensus target sequence between propanediol oxidoreductase of Escherichia coli and alcohol dehydrogenase II of Zymomonas mobilis, J. Biol. Chem, vol.269, pp.6592-6597, 1994.

M. R. Leonardo, P. R. Cunningham, C. , and D. P. , Anaerobic regulation of the adhE gene, encoding the fermentative alcohol dehydrogenase of Escherichia coli., Journal of Bacteriology, vol.175, issue.3, pp.870-878, 1993.
DOI : 10.1128/jb.175.3.870-878.1993

M. Pagels, S. Fuchs, J. Pané-farré, C. Kohler, L. Menschner et al., Redox sensing by a Rex-family repressor is involved in the regulation of anaerobic gene expression in Staphylococcus aureus, Molecular Microbiology, vol.38, issue.5, pp.1142-1161, 2010.
DOI : 10.1128/jb.174.10.3300-3310.1992

A. Steunou, D. Bhaya, M. M. Bateson, M. C. Melendrez, D. M. Ward et al., In situ analysis of nitrogen fixation and metabolic switching in unicellular thermophilic cyanobacteria inhabiting hot spring microbial mats, Proceedings of the National Academy of Sciences, vol.39, issue.5, pp.2398-2403, 2006.
DOI : 10.1016/S0022-1759(03)00223-0

K. S. Beckham, J. P. Connolly, J. M. Ritchie, D. Wang, J. A. Gawthorne et al., ???O157:H7, The metabolic enzyme AdhE controls the virulence of Escherichia coli O157:H7, pp.199-211, 2014.
DOI : 10.1073/pnas.1222014110

M. Shasmal, S. Dey, T. R. Shaikh, S. Bhakta, and J. Sengupta, E. coli metabolic protein aldehyde-alcohol dehydrogenase-E binds to the ribosome: a unique moonlighting action revealed, Scientific Reports, vol.98, issue.1, 2016.
DOI : 10.1073/pnas.181342398

E. Harris, The Chlamydomonas Sourcebook: A Comprehensive Guide to Biology and Laboratory Use, 1989.

R. Van-lis, A. Atteia, L. A. Nogaj, and S. I. Beale, Subcellular Localization and Light-Regulated Expression of Protoporphyrinogen IX Oxidase and Ferrochelatase in Chlamydomonas reinhardtii, PLANT PHYSIOLOGY, vol.139, issue.4, pp.1946-1958, 2005.
DOI : 10.1104/pp.105.069732

URL : https://hal.archives-ouvertes.fr/hal-00347332

D. M. Goodstein, S. Shu, R. Howson, R. Neupane, R. D. Hayes et al., Phytozome: a comparative platform for green plant genomics, Nucleic Acids Research, vol.10, issue.D1, pp.1178-1186, 2012.
DOI : 10.1101/gr.10.4.516

V. Dupierris, C. Masselon, M. Court, S. Kieffer-jaquinod, and C. Bruley, A toolbox for validation of mass spectrometry peptides identification and generation of database: IRMa, Bioinformatics, vol.9, issue.15, 1980.
DOI : 10.1016/S1359-6446(03)02978-7

D. Wessel and U. I. Flügge, A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids, Analytical Biochemistry, vol.138, issue.1, pp.141-143, 1984.
DOI : 10.1016/0003-2697(84)90782-6

I. Durrant, Light-based detection of biomolecules, Nature, vol.346, issue.6281, pp.297-298, 1990.
DOI : 10.1038/346297a0

F. W. Studier, Protein production by auto-induction in high-density shaking cultures, Protein Expression and Purification, vol.41, issue.1, pp.207-234, 2005.
DOI : 10.1016/j.pep.2005.01.016

O. 'toole and E. T. , Chlamydomonas cryopreparation methods for the 3-D analysis of cellular organelles, Methods Cell Biol, vol.96, pp.71-91, 2010.

C. Montella, L. Bellsolell, R. Pérez-luque, J. Badía, L. Baldoma et al., Crystal Structure of an Iron-Dependent Group III Dehydrogenase That Interconverts L-Lactaldehyde and L-1,2-Propanediol in Escherichia coli, Journal of Bacteriology, vol.187, issue.14, pp.4957-4966, 2005.
DOI : 10.1128/JB.187.14.4957-4966.2005

T. Zheng, D. G. Olson, L. Tian, Y. J. Bomble, M. E. Himmel et al., ABSTRACT, Journal of Bacteriology, vol.197, issue.15, pp.2610-2619, 2015.
DOI : 10.1128/JB.00232-15