Insights gained from a comprehensive all- against-all transcription factor binding motif benchmarking study - Aix-Marseille Université Access content directly
Journal Articles Genome Biology Year : 2020

Insights gained from a comprehensive all- against-all transcription factor binding motif benchmarking study

Abstract

Background: Positional weight matrix (PWM) is a de facto standard model to describe transcription factor (TF) DNA binding specificities. PWMs inferred from in vivo or in vitro data are stored in many databases and used in a plethora of biological applications. This calls for comprehensive benchmarking of public PWM models with large experimental reference sets.
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hal-02773294 , version 1 (04-06-2020)

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Giovanna Ambrosini, Ilya Vorontsov, Dmitry Penzar, Romain Groux, Oriol Fornés, et al.. Insights gained from a comprehensive all- against-all transcription factor binding motif benchmarking study. Genome Biology, 2020, 21 (1), ⟨10.1186/s13059-020-01996-3⟩. ⟨hal-02773294⟩

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